pycom08g06990

lipid catabolic process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
N/A
Physical Location & Seq
Reverse (-)
5570750 .. 5571388
639 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 639 bp
ATGATCTCCACCAGCACCGGAATCCCGCCTTCCTCCACCAACGCAGCGCGGGCCTCCGATACCGTTACGAGGACGCTCAGCACGTACGCCGACTTGTCCACCATGTTCGAACCGAAGTCCGCCATCAATTCCACCAGCGGCTTCATGATTCCCGACTTGACGGCTCTAATCTTGTTCTCTTTGACTGAGCAGAGCGAGTACAGAGCCGTCGACGCGTCCTTCTTCCCACGAAAACCACCGCACTCCAGAAGGTTCACCAGCAGCGGAATCGCACCCGACCGTCCAATTGCGACTTTGTTCTCTTCGATTTGCGAGAGGCGGAGCAGAGCGCAGGCGGCGTTCTCTTTCGCCGTGGCGGTCCCCGTCTTGAGCGACCGGACAAGCGGCTTGATCGCTCCCGACGAAGCGATGAGGTCCTTGTTCTCGTCGCACAGCGAAAGGTTGAGTATCGCGGTGACACCGTACTCCTGGAGCTGGAGATCGGTCGACGATAGGAGCGAAATCAACGGCTTAATCGCGCCGTTTCGGGCGATTTTGAGCCGATTTTCGGACTTGTTCTTGGCGAGGAGCCTGATCTCCATCGCCGCCTGCTTCTGCTCCTCAATCGAACCGTCTTCGAGGACGGCCACGAGCTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 Patatin

Protein Analysis

213

Amino Acids

23.03

Weight (kDa)

8.86

Isoelectric Point (pI)

53.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 210, 486
AccII CGCG 4 cut(s) 49, 215, 452, 518
AcoI YGGCCR 1 cut(s) 624
AfaI GTAC 3 cut(s) 86, 200, 464
AfiI CCNNNNNNNGG 3 cut(s) 69, 474, 547
AflIII ACRYGT 1 cut(s) 213
AjnI CCWGG 1 cut(s) 467
AluBI AGCT 2 cut(s) 474, 633
AluI AGCT 2 cut(s) 474, 633
AoxI GGCC 2 cut(s) 51, 624
ApeKI GCWGC 2 cut(s) 44, 261
AspLEI GCGC 3 cut(s) 49, 331, 520
AspS9I GGNCC 3 cut(s) 51, 358, 414
AsuHPI GGTGA 2 cut(s) 247, 466
AsuII TTCGAA 1 cut(s) 108
AvaII GGWCC 2 cut(s) 358, 414
BauI CACGAG 1 cut(s) 628
BbsI GAAGAC 1 cut(s) 606
BbvI GCAGC 2 cut(s) 56, 273
BccI CCATC 2 cut(s) 131, 587
BceAI ACGGC 5 cut(s) 177, 191, 335, 505, 523
BcgI CGANNNNNNTGC 2 cut(s) 250, 284
BciT130I CCWGG 1 cut(s) 469
BisI GCNGC 6 cut(s) 45, 139, 262, 336, 385, 585
BlpI GCTNAGC 1 cut(s) 77
BlsI GCNGC 6 cut(s) 46, 140, 263, 337, 386, 586
Bme1390I CCNGG 1 cut(s) 469
Bme18I GGWCC 2 cut(s) 358, 414
BmgT120I GGNCC 3 cut(s) 51, 358, 414
BmiI GGNNCC 2 cut(s) 360, 569
BmrFI CCNGG 1 cut(s) 469
BpiI GAAGAC 1 cut(s) 606
BpmI CTGGAG 3 cut(s) 229, 490, 496
Bpu1102I GCTNAGC 1 cut(s) 77
Bpu14I TTCGAA 1 cut(s) 108
BpuEI CTTGAG 1 cut(s) 388
BsaAI YACGTR 1 cut(s) 84
BsaBI GATNNNNATC 1 cut(s) 578
BsaJI CCNNGG 1 cut(s) 351
BsaWI WCCGGW 2 cut(s) 17, 375
Bsc4I CCNNNNNNNGG 3 cut(s) 69, 474, 547
Bse8I GATNNNNATC 1 cut(s) 578
BseBI CCWGG 1 cut(s) 469
BseDI CCNNGG 1 cut(s) 351
BseJI GATNNNNATC 1 cut(s) 578
BseLI CCNNNNNNNGG 3 cut(s) 69, 474, 547
BseMII CTCAG 2 cut(s) 91, 177
BseRI GAGGAG 2 cut(s) 580, 589
BseXI GCAGC 2 cut(s) 56, 273
Bsh1236I CGCG 4 cut(s) 49, 215, 452, 518
Bsh1285I CGRYCG 3 cut(s) 280, 376, 486
BshFI GGCC 2 cut(s) 53, 626
BsiEI CGRYCG 3 cut(s) 280, 376, 486
BsiSI CCGG 2 cut(s) 18, 376
BsiWI CGTACG 1 cut(s) 84
BslFI GGGAC 1 cut(s) 344
BslI CCNNNNNNNGG 3 cut(s) 69, 474, 547
BsmFI GGGAC 1 cut(s) 344
BsnI GGCC 2 cut(s) 53, 626
Bsp119I TTCGAA 1 cut(s) 108
Bsp143I GATC 4 cut(s) 3, 390, 479, 573
Bsp1720I GCTNAGC 1 cut(s) 77
BspANI GGCC 2 cut(s) 53, 626
BspCNI CTCAG 2 cut(s) 90, 178
BspFNI CGCG 4 cut(s) 49, 215, 452, 518
BspHI TCATGA 1 cut(s) 144
BspLI GGNNCC 2 cut(s) 360, 569
BspT104I TTCGAA 1 cut(s) 108
BssECI CCNNGG 1 cut(s) 351
BssMI GATC 4 cut(s) 3, 390, 479, 573
BssSI CACGAG 1 cut(s) 628
Bst2BI CACGAG 1 cut(s) 628
Bst2UI CCWGG 1 cut(s) 469
Bst4CI ACNGT 4 cut(s) 64, 281, 462, 612
Bst6I CTCTTC 1 cut(s) 307
BstBAI YACGTR 1 cut(s) 84
BstBI TTCGAA 1 cut(s) 108
BstC8I GCNNGC 3 cut(s) 51, 333, 589
BstDEI CTNAG 2 cut(s) 77, 186
BstDSI CCRYGG 1 cut(s) 351
BstFNI CGCG 4 cut(s) 49, 215, 452, 518
BstHHI GCGC 3 cut(s) 49, 331, 520
BstKTI GATC 4 cut(s) 6, 393, 482, 576
BstMBI GATC 4 cut(s) 3, 390, 479, 573
BstMCI CGRYCG 3 cut(s) 280, 376, 486
BstMWI GCNNNNNNNGC 3 cut(s) 50, 212, 335
BstNI CCWGG 1 cut(s) 469
BstSCI CCNGG 1 cut(s) 467
BstUI CGCG 4 cut(s) 49, 215, 452, 518
BstV1I GCAGC 2 cut(s) 56, 273
BstV2I GAAGAC 1 cut(s) 606
BsuRI GGCC 2 cut(s) 53, 626
BtgI CCRYGG 1 cut(s) 351
BtgZI GCGATG 2 cut(s) 422, 565
Cac8I GCNNGC 3 cut(s) 51, 333, 589
CciI TCATGA 1 cut(s) 144
CfoI GCGC 3 cut(s) 49, 331, 520
Cfr13I GGNCC 3 cut(s) 51, 358, 414
CseI GACGC 3 cut(s) 82, 204, 221
Csp6I GTAC 3 cut(s) 85, 199, 463
CviAII CATG 2 cut(s) 103, 145
CviQI GTAC 3 cut(s) 85, 199, 463
DdeI CTNAG 2 cut(s) 77, 186
DpnI GATC 4 cut(s) 5, 392, 481, 575
DpnII GATC 4 cut(s) 3, 390, 479, 573
EaeI YGGCCR 1 cut(s) 624
Eam1104I CTCTTC 1 cut(s) 307
EarI CTCTTC 1 cut(s) 307
EciI GGCGGA 2 cut(s) 109, 334
Eco47I GGWCC 2 cut(s) 358, 414
EcoO109I RGGNCCY 1 cut(s) 414
EcoRII CCWGG 1 cut(s) 467
FaeI CATG 2 cut(s) 106, 148
FaiI YATR 2 cut(s) 104, 146
FaqI GGGAC 1 cut(s) 344
FatI CATG 2 cut(s) 102, 144
FauI CCCGC 2 cut(s) 33, 42
FblI GTMKAC 2 cut(s) 210, 486
Fnu4HI GCNGC 6 cut(s) 45, 139, 262, 336, 385, 585
Fsp4HI GCNGC 6 cut(s) 45, 139, 262, 336, 385, 585
GlaI GCGC 3 cut(s) 48, 330, 519
GluI GCNGC 6 cut(s) 45, 139, 262, 336, 385, 585
GsuI CTGGAG 3 cut(s) 229, 490, 496
HaeIII GGCC 2 cut(s) 53, 626
HapII CCGG 2 cut(s) 18, 376
HgaI GACGC 3 cut(s) 82, 204, 221
HhaI GCGC 3 cut(s) 49, 331, 520
Hin1II CATG 2 cut(s) 106, 148
Hin6I GCGC 3 cut(s) 47, 329, 518
HinP1I GCGC 3 cut(s) 47, 329, 518
HincII GTYRAC 2 cut(s) 211, 487
HindII GTYRAC 2 cut(s) 211, 487
HinfI GANTC 3 cut(s) 21, 148, 267
HpaII CCGG 2 cut(s) 18, 376
HphI GGTGA 2 cut(s) 247, 466
Hpy166II GTNNAC 4 cut(s) 99, 211, 255, 487
Hpy188I TCNGA 2 cut(s) 58, 550
Hpy188III TCNNGA 5 cut(s) 145, 152, 246, 367, 398
Hpy8I GTNNAC 4 cut(s) 99, 211, 255, 487
Hpy99I CGWCG 5 cut(s) 212, 215, 404, 430, 491
HpyAV CCTTC 3 cut(s) 39, 229, 243
HpyCH4III ACNGT 4 cut(s) 64, 281, 462, 612
HpyCH4IV ACGT 1 cut(s) 83
HpyF10VI GCNNNNNNNGC 3 cut(s) 50, 212, 335
HpyF3I CTNAG 2 cut(s) 77, 186
HpySE526I ACGT 1 cut(s) 83
Hsp92II CATG 2 cut(s) 106, 148
HspAI GCGC 3 cut(s) 47, 329, 518
Kzo9I GATC 4 cut(s) 3, 390, 479, 573
LmnI GCTCC 6 cut(s) 321, 400, 471, 495, 567, 602
Lsp1109I GCAGC 2 cut(s) 56, 273
MaeII ACGT 1 cut(s) 83
MaeIII GTNAC 2 cut(s) 64, 454
MalI GATC 4 cut(s) 5, 392, 481, 575
MboI GATC 4 cut(s) 3, 390, 479, 573
MboII GAAGA 3 cut(s) 214, 294, 606
MfeI CAATTG 1 cut(s) 285
MluCI AATT 2 cut(s) 127, 285
MluI ACGCGT 1 cut(s) 213
MnlI CCTC 8 cut(s) 43, 63, 64, 309, 405, 558, 610, 612
MseI TTAA 1 cut(s) 512
MspA1I CMGCKG 2 cut(s) 138, 264
MspI CCGG 2 cut(s) 18, 376
MspR9I CCNGG 1 cut(s) 469
MunI CAATTG 1 cut(s) 285
MvaI CCWGG 1 cut(s) 469
MvnI CGCG 4 cut(s) 49, 215, 452, 518
MwoI GCNNNNNNNGC 3 cut(s) 50, 212, 335
NdeII GATC 4 cut(s) 3, 390, 479, 573
NlaIII CATG 2 cut(s) 106, 148
NlaIV GGNNCC 2 cut(s) 360, 569
NmuCI GTSAC 1 cut(s) 454
NspV TTCGAA 1 cut(s) 108
PagI TCATGA 1 cut(s) 144
PcsI WCGNNNNNNNCGW 3 cut(s) 80, 399, 495
PfeI GAWTC 3 cut(s) 21, 148, 267
Pfl23II CGTACG 1 cut(s) 84
PfoI TCCNGGA 1 cut(s) 467
PkrI GCNGC 6 cut(s) 46, 140, 263, 337, 386, 586
Ppu21I YACGTR 1 cut(s) 84
PpuMI RGGWCCY 1 cut(s) 414
Psp5II RGGWCCY 1 cut(s) 414
Psp6I CCWGG 1 cut(s) 467
PspGI CCWGG 1 cut(s) 467
PspLI CGTACG 1 cut(s) 84
PspN4I GGNNCC 2 cut(s) 360, 569
PspPI GGNCC 3 cut(s) 51, 358, 414
PspPPI RGGWCCY 1 cut(s) 414
RsaI GTAC 3 cut(s) 86, 200, 464
RsaNI GTAC 3 cut(s) 85, 199, 463
SalI GTCGAC 2 cut(s) 209, 485
SaqAI TTAA 1 cut(s) 512
SatI GCNGC 6 cut(s) 45, 139, 262, 336, 385, 585
Sau3AI GATC 4 cut(s) 3, 390, 479, 573
Sau96I GGNCC 3 cut(s) 51, 358, 414
ScrFI CCNGG 1 cut(s) 469
SetI ASST 6 cut(s) 86, 254, 416, 443, 476, 635
SfuI TTCGAA 1 cut(s) 108
SgrDI CGTCGACG 1 cut(s) 209
SinI GGWCC 2 cut(s) 358, 414
SmlI CTYRAG 1 cut(s) 367
SmoI CTYRAG 1 cut(s) 367
Sse9I AATT 2 cut(s) 127, 285
StyD4I CCNGG 1 cut(s) 467
TaaI ACNGT 4 cut(s) 64, 281, 462, 612
TaiI ACGT 1 cut(s) 86
TaqI TCGA 6 cut(s) 108, 210, 305, 486, 606, 617
TaqII GACCGA 1 cut(s) 472
TasI AATT 2 cut(s) 127, 285
TatI WGTACW 1 cut(s) 198
TauI GCSGC 4 cut(s) 141, 338, 387, 587
TfiI GAWTC 3 cut(s) 21, 148, 267
Tru1I TTAA 1 cut(s) 512
Tru9I TTAA 1 cut(s) 512
TseFI GTSAC 1 cut(s) 454
TseI GCWGC 2 cut(s) 44, 261
Tsp45I GTSAC 1 cut(s) 454
TspDTI ATGAA 1 cut(s) 133
VpaK11BI GGWCC 2 cut(s) 358, 414
XmiI GTMKAC 2 cut(s) 210, 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.